Protinfo
The Protinfo web server consists of a series of discrete modules
that model, and provide information about, protein folding, structure,
function, interaction, evolution, and design by applying computational
methodologies developed by our group. It serves as a complement to
our Bioverse
framework, where these modules are wholistically integrated, and
other resources available as a result of our computational biology
activities (see credits).
We have moved are moving! Please bear any downtime and broken links.
Interaction modelling
FDWD |
- fragment-based docking with dynamics. |
Function modelling
MFS |
- protein meta-functional signature indicating functional importance of each residue. |
SOAK |
- protein ion binding sites, types, affinities, and specificities from structure. |
PIRSpred |
- protein inhibitor resistance/susceptibility modelling. |
FSSA |
- protein functional signatures from structural alignments. |
Structure modelling
ABCM |
- protein tertiary structure using de novo and template modelling methods. |
PPC |
- protein complex structure structure modelling using the interolog method. |
Score |
- scores/pseudoenergies of protein conformations. |
NMR |
- protein tertiary structure using NMR chemical shift and NOESY data coupled with de novo simulation. |
PsiCSI |
protein secondary structure using NMR chemical shift data and neural networks. |
Hierarchies that encompass the above tools
CompBio |
- our group. |
Bioverse |
- object-oriented framework for exploring the relationships among the molecular, genomic, proteomic, systems, and organismal worlds. |
Protinfo |
- protein structure, function, and interaction modelling web server modules. |
CANDO |
- in virtuale small molecule repurposing pipeline to revolutionise drug discovery. |
Rice |
- structure, function, interaction of rice proteins and proteomes to devise new forms of nutritious rice for the world. |
Decoys 'R' Us |
- discriminate native like protein structures to evaluate scoring functions. |
Proteomusic |
- convert complex 3D structures to complex 3D music.
|
Prostring |
- convert an arbitrary string using the amino acid alphabet. |
CompBiki |
- documentation and dialetic. |
Protinfo ||
Bioverse ||
Samudrala Computational Biology Research Group ||
protinfo@compbio.org