Protinfo

The Protinfo web server consists of a series of discrete modules that model, and provide information about, protein folding, structure, function, interaction, evolution, and design by applying computational methodologies developed by our group. It serves as a complement to our Bioverse framework, where these modules are wholistically integrated, and other resources available as a result of our computational biology activities (see credits).

Interaction modelling

FDWD

- fragment-based docking with dynamics.

MFS	- protein meta-functional signature indicating functional importance of each residue.
SOAK	- protein ion binding sites, types, affinities, and specificities from structure.
PIRSpred	- protein inhibitor resistance/susceptibility modelling.
FSSA	- protein functional signatures from structural alignments.

ABCM	- protein tertiary structure using de novo and template modelling methods.
PPC	- protein complex structure structure modelling using the interolog method.
Score	- scores/pseudoenergies of protein conformations.
NMR	- protein tertiary structure using NMR chemical shift and NOESY data coupled with de novo simulation.
PsiCSI	protein secondary structure using NMR chemical shift data and neural networks.

CompBio	- our group.
Bioverse	- object-oriented framework for exploring the relationships among the molecular, genomic, proteomic, systems, and organismal worlds.
Protinfo	- protein structure, function, and interaction modelling web server modules.
CANDO	- in virtuale small molecule repurposing pipeline to revolutionise drug discovery.
Rice	- structure, function, interaction of rice proteins and proteomes to devise new forms of nutritious rice for the world.
Decoys 'R' Us	- discriminate native like protein structures to evaluate scoring functions.
Proteomusic	- convert complex 3D structures to complex 3D music.
Prostring	- convert an arbitrary string using the amino acid alphabet.
CompBiki	- documentation and dialetic.